Where can I find out extra about TaxonScrubber? Standalone utility for automated standardization of taxonomy names, developed by SALVIAS. TaxonScrubber will also be used to restructure flat-file specimen knowledge before importing it right into a relational database by eradicating spelling errors in species names. TaxonScrubber can be used to error-check and reformat massive numbers of taxonomic data, though it was created primarily for standardizing inventory information for the SALVIAS plots database. Concatenated fields may be damaged apart. There are now separate fields for epithets and authorities. When a person enters the string “Quercus alba L.â€, it is broken down into three fields: Genus, Species epithet, and Author. TaxonScrubber can separate a single name into up to two subspecific ranges (e.g., Quercus alba var. Recognizing and eradicating normal annotations from paperwork. All of the botanical annotations within the TaxonScrubber database can be found in Latin and English. “cf.†and different such annotations are removed and saved in a separate discipline, as are annotations like “aff.†and “vel.
†“cf†is used to indicate informal annotations of uncertainty, similar to question marks. A further annotation discipline is created for any textual content that isn’t recognized as a typical annotation and flagged for the user’s inspection. Spelling needs to be standardized. TaxonScrubber matches names to an inventory of validly published names after fields have been split and extraneous text eliminated (presently, TaxonScrubber uses a world record of plant names; nonetheless, later releases of TaxonScrubber could have the option of loading name lists for other taxa). Using TaxonScrubber’s “Hand scrub†utility, you’ll be able to right any remaining names to be in line with the standard world record after you’ve flagged those that match the standard listing. At this level, unmatched names may be labeled as morphospecies names (like Miconia sp.3) or indets (like Miconia sp.3) (e.g., Miconia sp.). Higher taxonomy needs to be standardized. To ensure that every one household names are standardized to the Missouri Botanical Garden’s TROPICOS database, TaxonScrubber is used. Users will be capable of make changes to the higher taxonomy in future versions to accommodate new taxonomic concepts (for example, APG familial concepts; see The Angiosperm Phylogeny Website).
There are a number of “flag fields†that are generated by TaxonScrubber when it’s scrubbing a taxon’s name, which indicate the status of the name’s parts (Family, genus, particular epithet, etc). The formatted and cleaned file’s export can embody or exclude these fields as wanted. Organizing and maintaining a file system. Files imported by TaxonScrubber are renamed, backed up, and maintained by TaxonScrubber within the database. Until the person exports the scrubbed file and replaces the original, the original information are usually not touched during the scrubbing process. Keeping observe of the names of the individuals who contributed to the venture. TaxonScrubber preserves the unique names after scrubbing in order that they are often in comparison with the “srubbed versionsâ€. It is entirely as much as the user whether or not to delete these fields after scrubbing them. Hand-scrubbing. Tools for handbook inspection of taxonomic fields are supplied by TaxonScrubber, comparable to filters that display only information containing chosen commonplace annotations, and matching to pull-down menus of customary names or names contained in the original file.
